55. Roy K, Gabunilas J, Gillespie A, Ngo D, Chanfreau GF.
Common
genomic elements promote transcriptional and DNA replication
roadblocks. Genome Res. 2016 Aug 18. [Epub ahead of print].
54. Gabunilas J, Chanfreau G.
Splicing-Mediated Autoregulation
Modulates Rpl22p Expression in Saccharomyces cerevisiae. PLoS Genet.
12(4):e1005999 (2016). eCollection 2016 Apr.
53. Hodko D, Ward T, Chanfreau G.
The Rtr1p CTD phosphatase
autoregulates its mRNA through a degradation pathway involving the
REX exonucleases. RNA. 22(4):559-70 (2016). Epub 2016 Feb 3.
52. Al-Hadid Q, Roy K, Chanfreau G, Clarke SG.
Methylation of yeast
ribosomal protein Rpl3 promotes translational elongation fidelity.
RNA. 22(4):489-98 (2016). Epub 2016 Jan 29.
51. Kaweeteerawat C., Chang CH, Roy KR, Liu R, Li R, Toso D,
Fischer H, Ivask A, Ji Z, Zink JI, Zhou ZH, Chanfreau GF, Telesca D,
Cohen Y, Holden PA, Nel AE, Godwin H.
Cu Nanoparticles Have
Different Impacts in Escherichia coli and Lactobacillus brevis than
Their Microsized and Ionic Analogues. ACS Nano. 9(7):7215-25 (2015).
Epub 2015 Jul 13.
50. Chanfreau G. Two degrading decades for RNA. RNA 21(4): 584-5
(2015).
47. Al-Hadid, Q., Roy, K., Munroe, W., Dzialo, M.C., Chanfreau, G.F.,
Clarke, S.G. (2014) Histidine
Methylation of Yeast Ribosomal Protein Rpl3p Is Required for Proper 60S
Subunit Assembly. Mol Cell Biol. Aug 1;34(15):2903-16.
46. Kawashima, T., Douglass, S., Gabunilas, J., Pellegrini, M.,
Chanfreau, G.F. (2014) Widespread
use of non-productive alternative splice sites inSaccharomyces
cerevisiae. PLoS Genet. Apr 10;10(4):
45. Chanfreau, G.F. (2013) Zinc'ing
down RNA Polymerase I. Transcription.
2013 Sep 27;4(5).
44. Lee, Y.J., Lee, C.Y., Grzechnik, A., Gonzales-Zubiate, F., Vashisht,
A.A., Lee, A., Wohlschlegel, J., Chanfreau, G.F. (2013) RNA
Polymerase I Stability Couples Cellular Growth to Metal Availability.
Mol Cell. Jul 11;51(1):105-15.
43. Hartman, E., Wang, Z., Zhang, Q., Roy, K., Chanfreau, G., Feigon, J.
(2013) Intrinsic
dynamics of an extended hydrophobic core in the S. cerevisiae RNase III
dsRBD contributes to recognition of specific RNA binding sites. J
Mol Biol. Feb 8;425(3):546-62.
42. Lee, Y.J., Huang, X., Kropat, J., Henras, A., Merchant, S.S.,
Dickson, R.C., Chanfreau, G.F. (2012) Sphingolipid
signaling mediates iron toxicity. Cell Metab. Jul 3;16(1):90-6.
41. Sayani, S., Chanfreau, G.F. (2012) Sequential
RNA degradation pathways provide a fail-safe mechanism to limit the
accumulation of unspliced transcripts in Saccharomyces
cerevisiae. RNA. Aug;18(8):1563-72.
40. Egecioglu, D.E., Kawashima, T.R., Chanfreau, G.F. (2012) Quality
control of MATa1 splicing and exon skipping by nuclear RNA degradation.
Nucleic Acids Res. Feb;40(4):1787-96.
39. Wang, Z., Hartman, E., Roy, K., Chanfreau, G., Feigon, J. (2011) Structure
of a Yeast RNase III dsRBD Complex with a Noncanonical RNA Substrate
Provides New Insights into Binding Specificity of dsRBDs.
Structure. Jul 13;19(7):999-1010.
38. Toesca, I., Nery, C.R., Fernandez, C.F., Sayani, S., Chanfreau,
G.F. (2011) Cryptic
transcription mediates repression of subtelomeric metal homeostasis
genes. PLoS Genet. Jun;7(6).
37. Koo, B.K., Park, C.J., Fernandez, C.F., Chim, N., Ding, Y.,
Chanfreau, G., Feigon, J. (2011) Structure
of H/ACA RNP Protein Nhp2p Reveals Cis/Trans Isomerization of a
Conserved Proline at the RNA and Nop10 Binding Interface. J Mol
Biol. 2011 Jun;411(5):927-42.
36. Egecioglu, D.E., Chanfreau, G. (2011) Proofreading
and spellchecking: A two-tier strategy for pre-mRNA splicing quality
control. RNA. Mar;17(3):383-9.
35. Chanfreau, G.F. (2010) A
dual role for RNA splicing signals. EMBO Rep. Oct;11(10):720-1.
34. Chanfreau, G. (2010) InvIGOrating
mRNAs during Quiescence. Mol Cell. May 14;38(3):317-8.
33. Kawashima, T., Pellegrini, M., Chanfreau, G.F. (2009) Nonsense-mediated
mRNA decay mutes the splicing defects of spliceosome component
mutations. RNA. Dec;15(12):2236-47.
32. Singh, M., Gonzales, F.A., Cascio, D., Heckmann, N., Chanfreau,
G., Feigon, J. (2009) Structure
and functional studies of the CS domain of the essential H/ACA RNP
assembly protein Shq1. J Biol Chem. 284, 1906-1916.
31. Sayani, S., Janis, M., Lee, C.Y., Toesca, I., Chanfreau, G.F.
(2008) Widespread
impact of nonsense-mediated mRNA decay on the yeast intronome.Mol
Cell. Aug 8;31(3):360-70.
30. Merchant, S.S., et al. (2007) The Chlamydomonas Genome
Reveals the Evolution of Key Animal and Plant Functions. Science
318:245-250. Online
supporting information.
29. Oberstrass, F.C., Lee, A., Stefl, R., Janis, M., Chanfreau, G.,
Allain, F.H. (2006) Shape-specific
recognition in the structure of the Vts1p SAM domain with RNA.
Nat Struct Mol Biol. Feb;13(2):160-7.
28 . Egecioglu, D.E., Henras, A.K., Chanfreau, G. (2006) Contributions
of Trf4p- and Trf5p-dependent polyadenylation to the processing and
degradative functions of the yeast nuclear exosome. RNA.
Jan;12(1):26-32.
27. Chanfreau, G. (2005) CUTting
genetic noise by polyadenylation-induced RNA degradation. Trends
Cell Biol. Dec;15(12):635-7.
26: Zer, C., Chanfreau, G. (2005) Regulation
and surveillance of normal and 3'-extended forms of the yeast
aci-reductone dioxygenase mRNA by RNase III cleavage and
exonucleolytic degradation. J
Biol Chem. Aug 12;280(32):28997-9003.
25: Lee, A., Henras, A.K., Chanfreau, G. (2005) Multiple
RNA surveillance pathways limit aberrant expression of iron uptake
mRNAs and prevent iron toxicity in S. cerevisiae. Mol
Cell. Jul
1;19(1):39-51.
24: Henras, A.K., Sam, M., Hiley, S.L., Wu, H., Hughes, T.R.,
Feigon, J., Chanfreau, G. (2005) Biochemical
and genomic analysis of substrate recognition by the double-stranded
RNA binding domain of yeast RNase III. RNA. Aug;11(8):1225-37.
23: Yang, P.K., Hoareau, C., Froment, C., Monsarrat, B., Henry, Y.,
Chanfreau, G. (2005) Cotranscriptional
Recruitment of the Pseudouridylsynthetase Cbf5p and of the RNA
Binding Protein Naf1p during H/ACA snoRNP Assembly. Mol Cell
Biol. Apr;25(8):3295-304.
22: Sam, M., Henras, A.K., Chanfreau, G. (2005) A
Conserved Major Groove Antideterminant for Saccharomyces cerevisiae
RNase III Recognition. Biochemistry. Mar 22;44(11):4181-7.
21: Sam, M., Hwang, J.H., Chanfreau, G., Abu-Omar, M.M. (2004) Hydroxyl
radical is the active species in photochemical DNA strand scission
by bis(peroxo)vanadium(V) phenanthroline. Inorg Chem. Dec
27;43(26):8447-55.
20: Henras, A.K., Bertrand, E., Chanfreau, G. (2004) A
cotranscriptional model for 3'-end processing of the Saccharomyces
cerevisiae pre-ribosomal RNA precursor. RNA. Oct;10(10):1572-85.
19: Wu, H., Henras, A., Chanfreau, G., Feigon, J. (2004) Structural
basis for recognition of the AGNN tetraloop RNA fold by the
double-stranded RNA-binding domain of Rnt1p RNase III. Proc Natl
Acad Sci U S A. Jun 1;101(22):8307-12.
18: Lee, C.Y., Lee, A., Chanfreau, G. (2003) The
roles of endonucleolytic cleavage and exonucleolytic digestion in
the 5'-end processing of S. cerevisiae box C/D snoRNAs. RNA.
Nov;9(11):1362-70.
17: Chanfreau, G. (2003) Conservation
of RNase III processing pathways and specificity in hemiascomycetes.
Eukaryot Cell. Oct;2(5):901-9.
16: Danin-Kreiselman, M., Lee, C.Y., Chanfreau, G. (2003) RNAse
III-mediated degradation of unspliced pre-mRNAs and lariat introns.
Mol Cell. May;11(5):1279-89.
15: Yang, P.K., Rotondo, G., Porras, T., Legrain, P., Chanfreau, G.
(2002) The
Shq1p.Naf1p complex is required for box H/ACA small nucleolar
ribonucleoprotein particle biogenesis. J Biol Chem. Nov
22;277(47):45235-42.
14: Wu H, Yang PK, Butcher SE, Kang S, Chanfreau G, Feigon J. (2001) A
novel family of RNA tetraloop structure forms the recognition site
for Saccharomyces cerevisiae RNase III. EMBO
J. Dec 17;20(24):7240-9. Link
to AGNN tetraloop structures
13. Kufel, J.l, Allmang, C., Chanfreau, G., Petfalski, E., Lafontaine, D.
L.�J.
, Tollervey, D. (2000) Precursors
to the U3 Small Nucleolar RNA Lack Small Nucleolar RNP Proteins but Are
Stabilized by La Binding. Mol. Cell. Biol. 20: 5415-5424.
12. Chanfreau,G., Buckle, M., Jacquier, A. (2000) Recognition
of a conserved class of RNA tetraloops by yeast RNase III. Proc. Natl.
Acad. Sci. 97: 3142-3147.
11. Allmang, C., Kufel, J., Chanfreau, G., Mitchell, P., Petfalski, E.,
Tollervey, D. (1999) Functions
of the exosome in rRNA, snoRNA and snRNA synthesis. EMBO J. 18:
5399-5410.
10. Chanfreau, G., Gouyette,C., Schwer,B., Jacquier, A. (1999) Trans-complementation
of the second step of pre-mRNA splicing by exogenous 5' exons.RNA 5:
876-882.
9. Chanfreau, G., Rotondo, G., Legrain, P., Jacquier, A. (1998) Processing
of a dicistronic small nucleolar RNA precursor by the RNA endonuclease
Rnt1. EMBO J. 17:
3726-3737.
8. Chanfreau, G., Legrain, P., Jacquier, A. (1998) Yeast
RNase III as a key processing enzyme in small nucleolar RNAs metabolism.
J. Mol. Biol. 284: 975-988.
7. Chanfreau, G., Abou Elelea, S., Ares, M., Guthrie, C. (1997) Alternative
3'-end processing of U5 snRNA by RNase III. Genes & Dev. 11:
2741-2751.
6. Chanfreau, G., Noble, S., Guthrie, C. (1996) Essential
Yeast Protein with unexpected similarity to subunits of cleavage and
polyadenylation specificity factor (CPSF). Science 274: 1511-1514.
5. Nolte, A., Chanfreau, G., Jacquier, A. (1998) Influence of substrate structure on in vitro ribozyme activity of a group II intron. RNA 4: 694-709.
4. Chanfreau, G., Jacquier, A. (1996) An RNA conformational change between the two chemical steps of group II self-splicing. EMBO J. 15: 3466-3476.
3. Chanfreau, G., Jacquier, A. (1994) Catalytic site components common to both splicing steps of a group II intron. Science 266: 1383-1387.
2. Chanfreau, G., Legrain, P., Dujon, B., Jacquier, A. (1994) Interaction between the first and last nucleotides of pre-mRNA introns is a determinant of 3' splice site selection in S. cerevisiae. Nucleic Acids Res. Jun 11;22(11):1981-7.
1. Chanfreau, G., Jacquier, A. (1993) Interaction of intronic boundaries is required for the second splicing step efficiency of a group II intron. EMBO J. 12: 5173-5180.