Week 4 Problem Set - 30BL (Turn in your computer assignment during week 5)
PART I. (Reduction of Camphor)
This assignment is to be completed in the UCLA Science Learning Center computing labs during the lab period (or afterwards if you don't complete it in the allotted time).
1. Optimize the above structural geometry of borneol, camphor and isoborneol. (see below instructions). Compare the heat of formation of borneol and isoborneol. Which one is thermodynamically more stable? How can you rationalize the differences?
2. Determine the dipol momentum for borneol, camphor and isoborneol. (see below instructions). In the GC spectrum, camphor has the shortest retention time, then isoborneol and borneol last. Can you rationalize the GC results based on the calculated dipole momenta of these compounds? (Note: The GC column is relatively non-polar.)
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Instructions:
- Build, minimize and save the structure. (don't forget to Minimize the structure after building it!!)
this is the minimize button. Always minimize your structure before leaving the building mode.
- click on to enter View Mode
- Select Calculations from the Setup menu.
The following window should appear. Select the options shown.
Verify the Charge is Neutral and Multiplicity is Singlet. Click OK.
- Select Submit from Setup menu.
- When the calculation is completed you will be notified.
- Select Output from the Display menu.
Record the heat of formation value given
See these Helpful Hints for manipulating structures!
Note:
1 au = 1 hartree = 627.5 kcal/mol |
1 eV = 23.06 kcal/mol |
1 hartree = 27.21 eV |
1 Ångstrom = 1.889762 atomic units = 10-8 cm |
PART II. (Aldol Condensation)
1. Calculate the dipole moment for dihedral angles: 0 through 180 degrees in 15 degree increments. Plot the dipole moment of benzil vs. the dihedral angle. |
Newman Projection of Benzil |
Instructions:
- click on Constrain Dihedral angle tool,
- select the atoms shown below (i.e., both oxygens and and carbonyl carbons in the sequence O..C..C..O))
- Click on the lock tool, , in the bottom right corner so that it looks like this,
- Set the dihedral angle to 0 and hit the ENTER key.
- click on the minimize tool, , and wait for the operation to complete.
- click on the minimize tool, , a second time and wait for the operation to complete.
- Select Calculations from the Setup menu. The following window should appear. Select the options shown.
- Make sure the
- Click OK to close the window.
- Select Submit from Setup menu. When the calculation is completed you will be notified.
- Under the Display menu, select Properties.
- A window should appear (the values in this example should differ from yours). If there are no values in the window then you need to double click on the molecule.
- Record the dipole moment and energy given. (In this example the dipole = 3.9 debye).
- Calculate the dipole moment for dihedral angles: 0 through 180 degrees in 15 degree increments. (Hint: Just click on the pink bond and change the value in the box.). Do not define a new constraint at this point. This will confuse the program completely!
- For the higher angles (>120 degrees), you might have to uncheck the symmetry box in the setup calculation menu. However, sometimes it works better if the approach is for the higher angles is from 180 degrees going down.
- Using EXCEL, plot the dipole moment and energy of benzil vs. the dihedral angle (use MS Excel, XY Scatter plot). Rationalize the observed trends.
Part III: Phase Transfer Oxidation (due in prelab)
1. A student has to identify the compound in a mixture using gas chromatography. The mixture contains an alkene (b.p.=40 oC) and an alcohol (90 oC). The column used is HP-5.
a. The solution for the GC run has be relatively diluted. Explain briefly.
b. Which solvent should he use, dichloromethane or hexadecane? Rationalize your choice.
c. He sets the temperature of the column to 50 oC. Under these conditions, the first peak elutes at 4.3 minutes and the second peak at 10.0 minutes. Assign the peaks and rationalize the large difference in retention time.
d.What would change if the spectrum would be obtained starting at 40oC and ending it at 100 oC (within 5 minutes)?
2. A separatory funnel is used this week during the work-up. Answer the following questions.
a. Why do you have to vent the separatory funnel frequently during the extraction?
b. Why do you have to remove the stopper on top when you drain the solution out of the separatory funnel?
c. Which layer is removed first from the separatory funnel?
d. Which tests do you have to perform prior to using the separatory funnel?
3. Referring to the reaction carried out in the lab, answer the following questions.
a. Which parameters determine the rate of reaction?
b. How could you test if the reaction is completed before you work it up?
c. Why is it important to minimize the quantity of magnesium sulfate used during the work-up?
d. Why do you place the beaker with the solution under your hood when removing the solvent?
e. When conducting the column chromatography step, the procedure asks to place the cotton ball in the tip of the pipette. Explain briefly why and how.
f. Which part do you collect during the chromatography step?